PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474440
Common NameARALYDRAFT_474440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 193aa    MW: 20962.7 Da    PI: 10.1254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474440genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192574255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++aa++ ++g
  474440 25 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDAAARDFRG 74
            59*******.**********654...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-202582No hitNo description
PfamPF008471.5E-122574IPR001471AP2/ERF domain
PROSITE profilePS5103223.962582IPR001471AP2/ERF domain
SMARTSM003804.3E-352588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-322582IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-222583IPR016177DNA-binding domain
PRINTSPR003673.7E-112637IPR001471AP2/ERF domain
PRINTSPR003673.7E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGSKPDPVAP TNPTRHESNA AKEIRYRGVR KRPWGRYAAE IRDPVKKTRV WLGTFDTAQQ  60
AARAYDAAAR DFRGSKAKTN FPTFLELNGK TEGVFVGSPT QSSTVIDSTS PTAPRFVTPP  120
QLELSLGGGA CRRKIPLVRP IYYFNMTAYP RKMTACGVQS ESETSSVLDF EGGAGKISQP  180
LDLDLNLAPP AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202182163ATERF1
3gcc_A2e-202182163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368841e-109AB036884.1 Arabidopsis thaliana AtERF8 mRNA for ERF transcription factor8, complete cds.
GenBankAC0080071e-109AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAC0225201e-109AC022520.2 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence.
GenBankAK1175411e-109AK117541.1 Arabidopsis thaliana At1g53170 mRNA for putative ethylene responsive element binding factor 8 (ERF8), complete cds, clone: RAFL17-19-H19.
GenBankBT0054011e-109BT005401.1 Arabidopsis thaliana clone U50346 putative ethylene responsive element binding factor 8 (At1g53170) mRNA, complete cds.
GenBankCP0026841e-109CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894425.11e-141hypothetical protein ARALYDRAFT_474440
SwissprotQ9MAI53e-98ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLD7KKE61e-141D7KKE6_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__4394__AT1G53170.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.15e-88ethylene response factor 8